Human SNP ID | rs3753573 |
---|---|
Human chromosome | chr1 |
Human SNP position | 185044870 |
Pig chromosome | chr9 |
Pig SNP position | 138669946 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 1q25.3 |
Chromosome id | chr1 |
Chromosome position | 185044870 |
Reported gene | RNF2 |
Mapped gene | LOC101929069 - RNF2 |
Upstream gene id | 101929069 |
Downstream gene id | 6045 |
SNP gene ids | |
Upstream gene distance | 36192 |
Downstream gene distance | 549 |
SNP risk allele | rs3753573-A |
SNPs | rs3753573 |
Merged | 0 |
SNP id current | 3753573 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.002 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Total antioxidants ) |
Or beta | 0.03 |
%95 Ci | [NR] mM increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | antioxidant measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005119 |
Study accession | GCST001762 |