SNP Detail For rs3753573
1.Mapping Information
Human SNP ID rs3753573
Human chromosome chr1
Human SNP position 185044870
Pig chromosome chr9
Pig SNP position 138669946
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region1q25.3
Chromosome idchr1
Chromosome position185044870
Reported geneRNF2
Mapped geneLOC101929069 - RNF2
Upstream gene id101929069
Downstream gene id6045
SNP gene ids
Upstream gene distance36192
Downstream gene distance549
SNP risk allelers3753573-A
SNPsrs3753573
Merged0
SNP id current3753573
Contextupstream_gene_variant
Intergenic1
Allele frequency0.002
P value0.000002
Pvalue mlog5.69897000433601
P value text(Total antioxidants )
Or beta0.03
%95 Ci[NR] mM increase
PlatformIllumina [899892]
CNVN
Mapped traitantioxidant measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005119
Study accessionGCST001762