Human SNP ID | rs3752246 |
---|---|
Human chromosome | chr19 |
Human SNP position | 1056493 |
Pig chromosome | chr2 |
Pig SNP position | 77633928 |
PubMed ID | 21460841 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21460841 |
Study | Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer__s disease. |
Disease/Trait | Alzheimer__s disease (late onset) |
Initial sample | 8,309 European ancestry cases, 7,366 European ancestry controls |
Replication sample | 10,523 European ancestry cases, 28,231 European ancestry controls |
Region | 19p13.3 |
Chromosome id | chr19 |
Chromosome position | 1056493 |
Reported gene | ABCA7 |
Mapped gene | ABCA7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10347 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3752246-G |
SNPs | rs3752246 |
Merged | 0 |
SNP id current | 3752246 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.21] |
Platform | Affymetrix, Illumina [2324889] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST001026 |