Human SNP ID | rs3750848 |
---|---|
Human chromosome | chr10 |
Human SNP position | 122455799 |
Pig chromosome | chr14 |
Pig SNP position | 143489369 |
PubMed ID | 23577725 |
---|---|
Journal | Ann Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23577725 |
Study | Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis. |
Disease/Trait | Age-related macular degeneration (extreme sampling) |
Initial sample | 720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls |
Replication sample | 70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls |
Region | 10q26.13 |
Chromosome id | chr10 |
Chromosome position | 122455799 |
Reported gene | ARMS2, BTBD16, PLEKHA1, HTRA1 |
Mapped gene | ARMS2, LOC105378525 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 387715, 105378525 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3750848-C |
SNPs | rs3750848 |
Merged | 0 |
SNP id current | 3750848 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 3E-29 |
Pvalue mlog | 28.5228787452803 |
P value text | |
Or beta | 3.12 |
%95 Ci | [2.55-3.80] |
Platform | Affymetrix [2543887] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001987 |