SNP Detail For rs3750848
1.Mapping Information
Human SNP ID rs3750848
Human chromosome chr10
Human SNP position 122455799
Pig chromosome chr14
Pig SNP position 143489369
2.Annotation Information
PubMed ID23577725
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23577725
StudyGenetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.
Disease/TraitAge-related macular degeneration (extreme sampling)
Initial sample720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls
Replication sample70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls
Region10q26.13
Chromosome idchr10
Chromosome position122455799
Reported geneARMS2, BTBD16, PLEKHA1, HTRA1
Mapped geneARMS2, LOC105378525
Upstream gene id
Downstream gene id
SNP gene ids387715, 105378525
Upstream gene distance
Downstream gene distance
SNP risk allelers3750848-C
SNPsrs3750848
Merged0
SNP id current3750848
Contextintron_variant
Intergenic0
Allele frequency0.37
P value3E-29
Pvalue mlog28.5228787452803
P value text
Or beta3.12
%95 Ci[2.55-3.80]
PlatformAffymetrix [2543887] (imputed)
CNVN
Mapped traitage-related macular degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001365
Study accessionGCST001987