Human SNP ID | rs3749147 |
---|---|
Human chromosome | chr2 |
Human SNP position | 27629051 |
Pig chromosome | chr3 |
Pig SNP position | 118531372 |
PubMed ID | 21386085 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/21386085 |
Study | A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium. |
Disease/Trait | Waist Circumference - Triglycerides (WC-TG) |
Initial sample | 22,161 European ancestry individuals |
Replication sample | NA |
Region | 2p23.3 |
Chromosome id | chr2 |
Chromosome position | 27629051 |
Reported gene | CCDC121 |
Mapped gene | GPN1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 11321 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3749147-C |
SNPs | rs3749147 |
Merged | 0 |
SNP id current | 3749147 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 0.18 |
%95 Ci | [0.12-0.24] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement, metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530, http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST001006 |