SNP Detail For rs3749147
1.Mapping Information
Human SNP ID rs3749147
Human chromosome chr2
Human SNP position 27629051
Pig chromosome chr3
Pig SNP position 118531372
2.Annotation Information
PubMed ID21386085
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/21386085
StudyA bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.
Disease/TraitWaist Circumference - Triglycerides (WC-TG)
Initial sample22,161 European ancestry individuals
Replication sampleNA
Region2p23.3
Chromosome idchr2
Chromosome position27629051
Reported geneCCDC121
Mapped geneGPN1
Upstream gene id
Downstream gene id
SNP gene ids11321
Upstream gene distance
Downstream gene distance
SNP risk allelers3749147-C
SNPsrs3749147
Merged0
SNP id current3749147
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.000000001
Pvalue mlog9
P value text
Or beta0.18
%95 Ci[0.12-0.24] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittriglyceride measurement, metabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530, http://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST001006