Human SNP ID | rs3748816 |
---|---|
Human chromosome | chr1 |
Human SNP position | 2595307 |
Pig chromosome | chr6 |
Pig SNP position | 58851473 |
PubMed ID | 20190752 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20190752 |
Study | Multiple common variants for celiac disease influencing immune gene expression. |
Disease/Trait | Celiac disease |
Initial sample | 4,533 European ancestry cases, 10,750 European ancestry controls |
Replication sample | 4,918 European ancestry cases, 5,684 European ancestry controls |
Region | 1p36.32 |
Chromosome id | chr1 |
Chromosome position | 2595307 |
Reported gene | MMEL1, TNFRSF14 |
Mapped gene | MMEL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79258 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3748816-? |
SNPs | rs3748816 |
Merged | 0 |
SNP id current | 3748816 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.66 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.09-1.18] |
Platform | Illumina [292387] |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST000612 |