Human SNP ID | rs374810 |
---|---|
Human chromosome | chr8 |
Human SNP position | 108083801 |
Pig chromosome | chr4 |
Pig SNP position | 31802723 |
PubMed ID | 25064007 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25064007 |
Study | A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. |
Disease/Trait | Ossification of the posterior longitudinal ligament of the spine |
Initial sample | 1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls |
Replication sample | 548 Japanese ancestry cases, 6,469 Japanese ancestry controls |
Region | 8q23.1 |
Chromosome id | chr8 |
Chromosome position | 108083801 |
Reported gene | RSPO2, EMC2, EIF3E |
Mapped gene | RSPO2 - AURKBPS1 |
Upstream gene id | 340419 |
Downstream gene id | 644233 |
SNP gene ids | |
Upstream gene distance | 116 |
Downstream gene distance | 47161 |
SNP risk allele | rs374810-G |
SNPs | rs374810 |
Merged | 0 |
SNP id current | 374810 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.611 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | |
Or beta | 1.34 |
%95 Ci | [1.24-1.44] |
Platform | Illumina [5163786] (imputed) |
CNV | N |
Mapped trait | ossification of the posterior longitudinal ligament of the spine |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005895 |
Study accession | GCST002545 |