Human SNP ID | rs3747517 |
---|---|
Human chromosome | chr2 |
Human SNP position | 162272314 |
Pig chromosome | chr15 |
Pig SNP position | 76427542 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 2q24.2 |
Chromosome id | chr2 |
Chromosome position | 162272314 |
Reported gene | IFIH1 |
Mapped gene | IFIH1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64135 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3747517-T |
SNPs | rs3747517 |
Merged | 0 |
SNP id current | 3747517 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.274 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | (EA, conditional on rs1990760) |
Or beta | 1.33 |
%95 Ci | [1.23-1.45] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |
PubMed ID | 25903422 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 2q24.2 |
Chromosome id | chr2 |
Chromosome position | 162272314 |
Reported gene | IFIH1 |
Mapped gene | IFIH1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64135 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3747517-T |
SNPs | rs3747517 |
Merged | 0 |
SNP id current | 3747517 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.274 |
P value | 0.000000000000000001 |
Pvalue mlog | 18 |
P value text | (conditional on rs1990760) |
Or beta | 1.3 |
%95 Ci | [1.22-1.37] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |