SNP Detail For rs3747093
1.Mapping Information
Human SNP ID rs3747093
Human chromosome chr22
Human SNP position 21630090
Pig chromosome chr14
Pig SNP position 53711271
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
Region22q11.21
Chromosome idchr22
Chromosome position21630090
Reported geneUBE2L3
Mapped geneYDJC
Upstream gene id
Downstream gene id
SNP gene ids150223
Upstream gene distance
Downstream gene distance
SNP risk allelers3747093-A
SNPsrs3747093
Merged
SNP id current3747093
Contextupstream_gene_variant
Intergenic0
Allele frequency
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text
Or beta1.26
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156