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SNP Detail For rs3739070
1.Mapping Information
| Human SNP ID | rs3739070 |
|---|---|
| Human chromosome | chr2 |
| Human SNP position | 238397627 |
| Pig chromosome | chr15 |
| Pig SNP position | 152359332 |
2.Annotation Information
| PubMed ID | 21835309 |
|---|---|
| Journal | Am J Hum Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/21835309 |
| Study | GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development. |
| Disease/Trait | Iris characteristics |
| Initial sample | 2,121 European ancestry individuals |
| Replication sample | 499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals |
| Region | 2q37.3 |
| Chromosome id | chr2 |
| Chromosome position | 238397627 |
| Reported gene | TRAF3IP1 |
| Mapped gene | TRAF3IP1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 26146 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3739070-A |
| SNPs | rs3739070 |
| Merged | 0 |
| SNP id current | 3739070 |
| Context | missense_variant |
| Intergenic | 0 |
| Allele frequency | |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | (Crypts) |
| Or beta | 0.16 |
| %95 Ci | [0.10-0.22] unit decrease |
| Platform | Illumina [274604] (imputed) |
| CNV | N |
| Mapped trait | eye measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004731 |
| Study accession | GCST001199 |
| PubMed ID | 21835309 |
| Journal | Am J Hum Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/21835309 |
| Study | GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development. |
| Disease/Trait | Iris characteristics |
| Initial sample | 2,121 European ancestry individuals |
| Replication sample | 499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals |
| Region | 2q37.3 |
| Chromosome id | chr2 |
| Chromosome position | 238397627 |
| Reported gene | TRAF3IP1 |
| Mapped gene | TRAF3IP1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 26146 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3739070-A |
| SNPs | rs3739070 |
| Merged | 0 |
| SNP id current | 3739070 |
| Context | missense_variant |
| Intergenic | 0 |
| Allele frequency | |
| P value | 0.000000000002 |
| Pvalue mlog | 11.698970004336 |
| P value text | (Furrows) |
| Or beta | 0.25 |
| %95 Ci | [0.19-0.31] unit increase |
| Platform | Illumina [274604] (imputed) |
| CNV | N |
| Mapped trait | eye measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004731 |
| Study accession | GCST001199 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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