SNP Detail For rs3738814
1.Mapping Information
Human SNP ID rs3738814
Human chromosome chr1
Human SNP position 17005181
Pig chromosome chr6
Pig SNP position 69974390
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region1p36.13
Chromosome idchr1
Chromosome position17005181
Reported geneATP13A2, SDHB
Mapped geneATP13A2
Upstream gene id
Downstream gene id
SNP gene ids23400
Upstream gene distance
Downstream gene distance
SNP risk allelers3738814-A
SNPsrs3738814
Merged0
SNP id current3738814
Contextintron_variant
Intergenic0
Allele frequency0.35
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta0.06
%95 Ci[0.04-0.08] cm increase
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611
PubMed ID25429064
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25429064
StudyMeta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.
Disease/TraitHeight
Initial sample36,227 East Asian ancestry individuals
Replication sample57,699 East Asian ancestry individuals
Region1p36.13
Chromosome idchr1
Chromosome position17005181
Reported geneATP13A2
Mapped geneATP13A2
Upstream gene id
Downstream gene id
SNP gene ids23400
Upstream gene distance
Downstream gene distance
SNP risk allelers3738814-A
SNPsrs3738814
Merged0
SNP id current3738814
Contextintron_variant
Intergenic0
Allele frequency0.3
P value1E-24
Pvalue mlog24
P value text
Or beta0.061
%95 Ci[0.047-0.075] unit increase
PlatformAffymetrix, Illumina [2704730] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002702