Human SNP ID | rs3738814 |
---|---|
Human chromosome | chr1 |
Human SNP position | 17005181 |
Pig chromosome | chr6 |
Pig SNP position | 69974390 |
PubMed ID | 20189936 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20189936 |
Study | A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. |
Disease/Trait | Height |
Initial sample | 19,633 Japanese ancestry individuals |
Replication sample | NA |
Region | 1p36.13 |
Chromosome id | chr1 |
Chromosome position | 17005181 |
Reported gene | ATP13A2, SDHB |
Mapped gene | ATP13A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23400 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3738814-A |
SNPs | rs3738814 |
Merged | 0 |
SNP id current | 3738814 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.35 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.04-0.08] cm increase |
Platform | Illumina [420885] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000611 |
PubMed ID | 25429064 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25429064 |
Study | Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. |
Disease/Trait | Height |
Initial sample | 36,227 East Asian ancestry individuals |
Replication sample | 57,699 East Asian ancestry individuals |
Region | 1p36.13 |
Chromosome id | chr1 |
Chromosome position | 17005181 |
Reported gene | ATP13A2 |
Mapped gene | ATP13A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23400 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3738814-A |
SNPs | rs3738814 |
Merged | 0 |
SNP id current | 3738814 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.3 |
P value | 1E-24 |
Pvalue mlog | 24 |
P value text | |
Or beta | 0.061 |
%95 Ci | [0.047-0.075] unit increase |
Platform | Affymetrix, Illumina [2704730] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002702 |