SNP Detail For rs3733829
1.Mapping Information
Human SNP ID rs3733829
Human chromosome chr19
Human SNP position 40804666
Pig chromosome chr6
Pig SNP position 44690816
2.Annotation Information
PubMed ID20418890
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20418890
StudyGenome-wide meta-analyses identify multiple loci associated with smoking behavior.
Disease/TraitSmoking behavior
Initial sampleUp to 74,035 European ancestry individuals
Replication sampleUp to 68,988 participants
Region19q13.2
Chromosome idchr19
Chromosome position40804666
Reported geneEGLN2, CYP2A6
Mapped geneEGLN2, RAB4B-EGLN2
Upstream gene id
Downstream gene id
SNP gene ids112398, 100529264
Upstream gene distance
Downstream gene distance
SNP risk allelers3733829-G
SNPsrs3733829
Merged0
SNP id current3733829
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.36
P value0.00000001
Pvalue mlog8
P value text(CPD)
Or beta0.33
%95 Ci[0.22-0.44] CPD increase
PlatformAffymetrix, Illumina, Perlegen [~ 2500000] (imputed)
CNVN
Mapped traitsmoking behavior
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318
Study accessionGCST000666