Human SNP ID | rs3733829 |
---|---|
Human chromosome | chr19 |
Human SNP position | 40804666 |
Pig chromosome | chr6 |
Pig SNP position | 44690816 |
PubMed ID | 20418890 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20418890 |
Study | Genome-wide meta-analyses identify multiple loci associated with smoking behavior. |
Disease/Trait | Smoking behavior |
Initial sample | Up to 74,035 European ancestry individuals |
Replication sample | Up to 68,988 participants |
Region | 19q13.2 |
Chromosome id | chr19 |
Chromosome position | 40804666 |
Reported gene | EGLN2, CYP2A6 |
Mapped gene | EGLN2, RAB4B-EGLN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 112398, 100529264 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3733829-G |
SNPs | rs3733829 |
Merged | 0 |
SNP id current | 3733829 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (CPD) |
Or beta | 0.33 |
%95 Ci | [0.22-0.44] CPD increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2500000] (imputed) |
CNV | N |
Mapped trait | smoking behavior |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318 |
Study accession | GCST000666 |