SNP Detail For rs3731827
1.Mapping Information
Human SNP ID rs3731827
Human chromosome chr2
Human SNP position 85578945
Pig chromosome chr3
Pig SNP position 62251987
2.Annotation Information
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region2p11.2
Chromosome idchr2
Chromosome position85578945
Reported geneNR
Mapped geneVAMP8
Upstream gene id
Downstream gene id
SNP gene ids8673
Upstream gene distance
Downstream gene distance
SNP risk allelers3731827-T
SNPsrs3731827
Merged
SNP id current3731827
Contextintron_variant
Intergenic0
Allele frequency0.584
P value0.000000001
Pvalue mlog9
P value text
Or beta1.13
%95 Ci[1.09-1.18]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944