SNP Detail For rs3731714
1.Mapping Information
Human SNP ID rs3731714
Human chromosome chr2
Human SNP position 201196097
Pig chromosome chr15
Pig SNP position 116142760
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region2q33.1
Chromosome idchr2
Chromosome position201196097
Reported geneNR
Mapped geneCASP10
Upstream gene id
Downstream gene id
SNP gene ids843
Upstream gene distance
Downstream gene distance
SNP risk allelers3731714-T
SNPsrs3731714
Merged0
SNP id current3731714
Contextintron_variant
Intergenic0
Allele frequency0.2989
P value0.000002
Pvalue mlog5.69897000433601
P value text(Cis/trans-18:2, EA)
Or beta0.0022
%95 Ci[0.0012-0.0032] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcis/trans-18:2 fatty acid measurement, trans fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006824, http://www.ebi.ac.uk/efo/EFO_0006821
Study accessionGCST002721