Human SNP ID | rs3730682 |
---|---|
Human chromosome | chr18 |
Human SNP position | 54270962 |
Pig chromosome | chr1 |
Pig SNP position | 114106555 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 18q21.2 |
Chromosome id | chr18 |
Chromosome position | 54270962 |
Reported gene | POL1, STARD6 |
Mapped gene | POLI |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 11201 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3730682-G |
SNPs | rs3730682 |
Merged | 0 |
SNP id current | 3730682 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.189 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.1-1.23] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |