SNP Detail For rs3730682
1.Mapping Information
Human SNP ID rs3730682
Human chromosome chr18
Human SNP position 54270962
Pig chromosome chr1
Pig SNP position 114106555
2.Annotation Information
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region18q21.2
Chromosome idchr18
Chromosome position54270962
Reported genePOL1, STARD6
Mapped genePOLI
Upstream gene id
Downstream gene id
SNP gene ids11201
Upstream gene distance
Downstream gene distance
SNP risk allelers3730682-G
SNPsrs3730682
Merged0
SNP id current3730682
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.189
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.16
%95 Ci[1.1-1.23]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874