Human SNP ID | rs3729639 |
---|---|
Human chromosome | chr16 |
Human SNP position | 67191598 |
Pig chromosome | chr6 |
Pig SNP position | 25123209 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | HDL cholesterol |
Initial sample | 7,813 African American individuals |
Replication sample | 4,323 African American and Afro-Caribbean individuals |
Region | 16q22.1 |
Chromosome id | chr16 |
Chromosome position | 67191598 |
Reported gene | LCAT |
Mapped gene | EXOC3L1 - E2F4 |
Upstream gene id | 283849 |
Downstream gene id | 1874 |
SNP gene ids | |
Upstream gene distance | 1394 |
Downstream gene distance | 567 |
SNP risk allele | rs3729639-T |
SNPs | rs3729639 |
Merged | 0 |
SNP id current | 3729639 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 0.09 |
%95 Ci | [0.064-0.116] unit increase |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000974 |