SNP Detail For rs3729639
1.Mapping Information
Human SNP ID rs3729639
Human chromosome chr16
Human SNP position 67191598
Pig chromosome chr6
Pig SNP position 25123209
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitHDL cholesterol
Initial sample7,813 African American individuals
Replication sample4,323 African American and Afro-Caribbean individuals
Region16q22.1
Chromosome idchr16
Chromosome position67191598
Reported geneLCAT
Mapped geneEXOC3L1 - E2F4
Upstream gene id283849
Downstream gene id1874
SNP gene ids
Upstream gene distance1394
Downstream gene distance567
SNP risk allelers3729639-T
SNPsrs3729639
Merged0
SNP id current3729639
Contextupstream_gene_variant
Intergenic1
Allele frequency0.44
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta0.09
%95 Ci[0.064-0.116] unit increase
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000974