Human SNP ID | rs372091 |
---|---|
Human chromosome | chr11 |
Human SNP position | 5496926 |
Pig chromosome | chr13 |
Pig SNP position | 175362937 |
PubMed ID | 22895189 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/22895189 |
Study | Genome-wide association study indicates two novel resistance loci for severe malaria. |
Disease/Trait | Malaria |
Initial sample | 1,325 African ancestry, 828 African ancestry controls |
Replication sample | 2,229 African ancestry cases, 3,526 African ancestry controls |
Region | 11p15.4 |
Chromosome id | chr11 |
Chromosome position | 5496926 |
Reported gene | HBB |
Mapped gene | OR51B5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 282763 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs372091-C |
SNPs | rs372091 |
Merged | 0 |
SNP id current | 372091 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.972 |
P value | 0.00000000000006 |
Pvalue mlog | 13.2218487496163 |
P value text | |
Or beta | 2.17 |
%95 Ci | [NR] |
Platform | Affymetrix [4205739] (imputed) |
CNV | N |
Mapped trait | malaria |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001068 |
Study accession | GCST001637 |