SNP Detail For rs368433
1.Mapping Information
Human SNP ID rs368433
Human chromosome chr1
Human SNP position 161514420
Pig chromosome chr13
Pig SNP position 151108879
2.Annotation Information
PubMed ID23652523
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/23652523
StudyIdentification of genetic loci associated with Helicobacter pylori serologic status.
Disease/TraitHelicobacter pylori serologic status
Initial sample2,623 European ancestry high titer cases, 7,862 European ancestry low or no titer controls
Replication sampleNA
Region1q23.3
Chromosome idchr1
Chromosome position161514420
Reported geneFCGR2A, HSPA6
Mapped geneFCGR2A
Upstream gene id
Downstream gene id
SNP gene ids2212
Upstream gene distance
Downstream gene distance
SNP risk allelers368433-C
SNPsrs368433
Merged0
SNP id current368433
Contextintron_variant
Intergenic0
Allele frequency0.84
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.37
%95 Ci[1.23-1.54]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitanti-Heliobacter pylori serum IgG measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005247
Study accessionGCST002014