Human SNP ID | rs368433 |
---|---|
Human chromosome | chr1 |
Human SNP position | 161514420 |
Pig chromosome | chr13 |
Pig SNP position | 151108879 |
PubMed ID | 23652523 |
---|---|
Journal | JAMA |
Link | www.ncbi.nlm.nih.gov/pubmed/23652523 |
Study | Identification of genetic loci associated with Helicobacter pylori serologic status. |
Disease/Trait | Helicobacter pylori serologic status |
Initial sample | 2,623 European ancestry high titer cases, 7,862 European ancestry low or no titer controls |
Replication sample | NA |
Region | 1q23.3 |
Chromosome id | chr1 |
Chromosome position | 161514420 |
Reported gene | FCGR2A, HSPA6 |
Mapped gene | FCGR2A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2212 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs368433-C |
SNPs | rs368433 |
Merged | 0 |
SNP id current | 368433 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.84 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.23-1.54] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | anti-Heliobacter pylori serum IgG measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005247 |
Study accession | GCST002014 |