Human SNP ID | rs367615 |
---|---|
Human chromosome | chr5 |
Human SNP position | 109613236 |
Pig chromosome | chr2 |
Pig SNP position | 119063574 |
PubMed ID | 23300701 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23300701 |
Study | Genome-wide search for gene-gene interactions in colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 8,380 European ancestry cases, 10,558 European ancestry controls |
Replication sample | 2,527 European ancestry cases, 2,628 European ancestry controls |
Region | 5q21.3 x 10p14 |
Chromosome id | chr5 x 10 |
Chromosome position | 109613236 x 8659256 |
Reported gene | intergenic x intergenic |
Mapped gene | KRT18P42 - LOC105379118 x LOC105376400 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs367615-? x rs10795668-? |
SNPs | rs367615 x rs10795668 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant x upstream_gene_variant |
Intergenic | |
Allele frequency | 0.73 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.20-1.49] |
Platform | Illumina [2011668] |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST001794 |