SNP Detail For rs367615
1.Mapping Information
Human SNP ID rs367615
Human chromosome chr5
Human SNP position 109613236
Pig chromosome chr2
Pig SNP position 119063574
2.Annotation Information
PubMed ID23300701
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23300701
StudyGenome-wide search for gene-gene interactions in colorectal cancer.
Disease/TraitColorectal cancer
Initial sample8,380 European ancestry cases, 10,558 European ancestry controls
Replication sample2,527 European ancestry cases, 2,628 European ancestry controls
Region5q21.3 x 10p14
Chromosome idchr5 x 10
Chromosome position109613236 x 8659256
Reported geneintergenic x intergenic
Mapped geneKRT18P42 - LOC105379118 x LOC105376400
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers367615-? x rs10795668-?
SNPsrs367615 x rs10795668
Merged0
SNP id current
Contextintergenic_variant x upstream_gene_variant
Intergenic
Allele frequency0.73
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.35
%95 Ci[1.20-1.49]
PlatformIllumina [2011668]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001794