Human SNP ID | rs36056951 |
---|---|
Human chromosome | chr8 |
Human SNP position | 138953555 |
Pig chromosome | chr4 |
Pig SNP position | 3802653 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cerebrospinal T-tau levels |
Initial sample | up to 189 European and other ancestry early mild cognitive impairment cases, up to 251 European and other ancestry late mild cognitive impairment cases, up to 121 European and other ancestry Alzheimer__s disease cases, up to 215 European and other ance |
Replication sample | up to 3 European and other ancestry significant memory concern cases, up to 57 European and other ancestry early mild cognitive impairment cases, up to 61 European and other ancestry late mild cognitive impairment cases, up to 62 European and other an |
Region | 8q24.3 |
Chromosome id | chr8 |
Chromosome position | 138953555 |
Reported gene | COL22A1, KCNK9 |
Mapped gene | COL22A1 - KCNK9 |
Upstream gene id | 169044 |
Downstream gene id | 51305 |
SNP gene ids | |
Upstream gene distance | 39461 |
Downstream gene distance | 647283 |
SNP risk allele | rs36056951-C |
SNPs | rs36056951 |
Merged | |
SNP id current | 36056951 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 0.3291 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cerebrospinal fluid biomarker measurement, t-tau measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006794, http://www.ebi.ac.uk/efo/EFO_0004760 |
Study accession | GCST003070 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cerebrospinal fluid t-tau:AB1-42 ratio |
Initial sample | up to 189 European and other ancestry early mild cognitive impairment cases, up to 251 European and other ancestry late mild cognitive impairment cases, up to 121 European and other ancestry Alzheimer__s disease cases, up to 215 European and other ance |
Replication sample | up to 3 European and other ancestry significant memory concern cases, up to 57 European and other ancestry early mild cognitive impairment cases, up to 61 European and other ancestry late mild cognitive impairment cases, up to 62 European and other an |
Region | 8q24.3 |
Chromosome id | chr8 |
Chromosome position | 138953555 |
Reported gene | COL22A1, KCNK9 |
Mapped gene | COL22A1 - KCNK9 |
Upstream gene id | 169044 |
Downstream gene id | 51305 |
SNP gene ids | |
Upstream gene distance | 39461 |
Downstream gene distance | 647283 |
SNP risk allele | rs36056951-C |
SNPs | rs36056951 |
Merged | |
SNP id current | 36056951 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.3732 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | t-tau:beta-amyloid 1-42 ratio measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007708 |
Study accession | GCST003079 |