Human SNP ID | rs359980 |
---|---|
Human chromosome | chr2 |
Human SNP position | 218964484 |
Pig chromosome | chr15 |
Pig SNP position | 133922354 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 2q35 |
Chromosome id | chr2 |
Chromosome position | 218964484 |
Reported gene | CDK5R2 |
Mapped gene | CDK5R2 - LINC00608 |
Upstream gene id | 8941 |
Downstream gene id | 151300 |
SNP gene ids | |
Upstream gene distance | 2329 |
Downstream gene distance | 11800 |
SNP risk allele | rs359980-G |
SNPs | rs359980 |
Merged | 0 |
SNP id current | 359980 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.054 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (TBF-b1 ) |
Or beta | 0.03 |
%95 Ci | [NR] pg/mL increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | transforming growth factor beta measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004818 |
Study accession | GCST001762 |