SNP Detail For rs359980
1.Mapping Information
Human SNP ID rs359980
Human chromosome chr2
Human SNP position 218964484
Pig chromosome chr15
Pig SNP position 133922354
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q35
Chromosome idchr2
Chromosome position218964484
Reported geneCDK5R2
Mapped geneCDK5R2 - LINC00608
Upstream gene id8941
Downstream gene id151300
SNP gene ids
Upstream gene distance2329
Downstream gene distance11800
SNP risk allelers359980-G
SNPsrs359980
Merged0
SNP id current359980
Contextupstream_gene_variant
Intergenic1
Allele frequency0.054
P value0.000007
Pvalue mlog5.15490195998574
P value text(TBF-b1 )
Or beta0.03
%95 Ci[NR] pg/mL increase
PlatformIllumina [899892]
CNVN
Mapped traittransforming growth factor beta measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004818
Study accessionGCST001762