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SNP Detail For rs356219
1.Mapping Information
| Human SNP ID | rs356219 |
|---|---|
| Human chromosome | chr4 |
| Human SNP position | 89716450 |
| Pig chromosome | chr8 |
| Pig SNP position | 138783049 |
2.Annotation Information
| PubMed ID | 21292315 |
|---|---|
| Journal | Lancet |
| Link | www.ncbi.nlm.nih.gov/pubmed/21292315 |
| Study | Imputation of sequence variants for identification of genetic risks for Parkinson__s disease: a meta-analysis of genome-wide association studies. |
| Disease/Trait | Parkinson__s disease |
| Initial sample | 5,333 European ancestry cases, 12,019 European ancestry controls |
| Replication sample | 7,053 cases, 9,007 controls |
| Region | 4q22.1 |
| Chromosome id | chr4 |
| Chromosome position | 89716450 |
| Reported gene | SNCA |
| Mapped gene | LOC105377329 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 105377329 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs356219-G |
| SNPs | rs356219 |
| Merged | 0 |
| SNP id current | 356219 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.39 |
| P value | 2E-47 |
| Pvalue mlog | 46.698970004336 |
| P value text | |
| Or beta | 1.29 |
| %95 Ci | [1.25-1.33] |
| Platform | Illumina [7689524] (imputed) |
| CNV | N |
| Mapped trait | Parkinson__s disease |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
| Study accession | GCST000959 |
| PubMed ID | 22438815 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/22438815 |
| Study | Comprehensive research synopsis and systematic meta-analyses in Parkinson__s disease genetics: The PDGene database. |
| Disease/Trait | Parkinson__s disease |
| Initial sample | 2,197 cases, 2,061 controls |
| Replication sample | Up to 98,080 European and Asian ancestry individuals |
| Region | 4q22.1 |
| Chromosome id | chr4 |
| Chromosome position | 89716450 |
| Reported gene | SNCA |
| Mapped gene | LOC105377329 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 105377329 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs356219-? |
| SNPs | rs356219 |
| Merged | 0 |
| SNP id current | 356219 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.41 |
| P value | 6E-65 |
| Pvalue mlog | 64.2218487496163 |
| P value text | (EA) |
| Or beta | 1.29 |
| %95 Ci | [1.25-1.33] |
| Platform | Illumina, Perlegen [7123920] (imputed) |
| CNV | N |
| Mapped trait | Parkinson__s disease |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
| Study accession | GCST001445 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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