SNP Detail For rs35391
1.Mapping Information
Human SNP ID rs35391
Human chromosome chr5
Human SNP position 33955568
Pig chromosome chr16
Pig SNP position 20728799
2.Annotation Information
PubMed ID19340012
JournalJ Invest Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/19340012
StudyGenome-wide association study of tanning phenotype in a population of European ancestry.
Disease/TraitTanning
Initial sample2,287 European ancestry female individuals
Replication sample870 European ancestry female individuals
Region5p13.2
Chromosome idchr5
Chromosome position33955568
Reported geneMATP
Mapped geneSLC45A2
Upstream gene id
Downstream gene id
SNP gene ids51151
Upstream gene distance
Downstream gene distance
SNP risk allelers35391-T
SNPsrs35391
Merged0
SNP id current35391
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta0.44
%95 Ci[0.30-0.58] tanning ability score decrease
PlatformIllumina [528173]
CNVN
Mapped traitsuntan
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004279
Study accessionGCST000371