Human SNP ID | rs35390 |
---|---|
Human chromosome | chr5 |
Human SNP position | 33955221 |
Pig chromosome | chr16 |
Pig SNP position | 20728456 |
PubMed ID | 21983787 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21983787 |
Study | Genome-wide association study identifies three new melanoma susceptibility loci. |
Disease/Trait | Melanoma |
Initial sample | 2,804 European ancestry cases, 7,618 European ancestry controls |
Replication sample | 5,551 European ancestry cases, 7,449 European ancestry controls |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 33955221 |
Reported gene | SLC45A2 |
Mapped gene | SLC45A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51151 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs35390-? |
SNPs | rs35390 |
Merged | 0 |
SNP id current | 35390 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.98 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 2.78 |
%95 Ci | [1.89-4.35] |
Platform | Illumina [594997] |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST001267 |