SNP Detail For rs35390
1.Mapping Information
Human SNP ID rs35390
Human chromosome chr5
Human SNP position 33955221
Pig chromosome chr16
Pig SNP position 20728456
2.Annotation Information
PubMed ID21983787
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21983787
StudyGenome-wide association study identifies three new melanoma susceptibility loci.
Disease/TraitMelanoma
Initial sample2,804 European ancestry cases, 7,618 European ancestry controls
Replication sample5,551 European ancestry cases, 7,449 European ancestry controls
Region5p13.2
Chromosome idchr5
Chromosome position33955221
Reported geneSLC45A2
Mapped geneSLC45A2
Upstream gene id
Downstream gene id
SNP gene ids51151
Upstream gene distance
Downstream gene distance
SNP risk allelers35390-?
SNPsrs35390
Merged0
SNP id current35390
Contextintron_variant
Intergenic0
Allele frequency0.98
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta2.78
%95 Ci[1.89-4.35]
PlatformIllumina [594997]
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST001267