SNP Detail For rs35123781
1.Mapping Information
Human SNP ID rs35123781
Human chromosome chr5
Human SNP position 139685595
Pig chromosome chr2
Pig SNP position 147323351
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region5q31.2
Chromosome idchr5
Chromosome position139685595
Reported geneNR
Mapped geneCXXC5 - PSD2
Upstream gene id51523
Downstream gene id84249
SNP gene ids
Upstream gene distance1713
Downstream gene distance36308
SNP risk allelers35123781-G
SNPsrs35123781
Merged
SNP id current35123781
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.0526316
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048