SNP Detail For rs35107139
1.Mapping Information
Human SNP ID rs35107139
Human chromosome chr14
Human SNP position 53952388
Pig chromosome chr1
Pig SNP position 203776569
2.Annotation Information
PubMed ID25990418
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/25990418
StudyA new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.
Disease/TraitColorectal cancer
Initial sample7,577 European ancestry cases, 9,979 European ancestry controls
Replication sampleNA
Region14q22.2
Chromosome idchr14
Chromosome position53952388
Reported geneBMP4
Mapped geneBMP4
Upstream gene id
Downstream gene id
SNP gene ids652
Upstream gene distance
Downstream gene distance
SNP risk allelers35107139-C
SNPsrs35107139
Merged0
SNP id current35107139
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.1
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 10000000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002919