Human SNP ID | rs35107139 |
---|---|
Human chromosome | chr14 |
Human SNP position | 53952388 |
Pig chromosome | chr1 |
Pig SNP position | 203776569 |
PubMed ID | 25990418 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/25990418 |
Study | A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 7,577 European ancestry cases, 9,979 European ancestry controls |
Replication sample | NA |
Region | 14q22.2 |
Chromosome id | chr14 |
Chromosome position | 53952388 |
Reported gene | BMP4 |
Mapped gene | BMP4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 652 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs35107139-C |
SNPs | rs35107139 |
Merged | 0 |
SNP id current | 35107139 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.1 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 10000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002919 |