Human SNP ID | rs35053544 |
---|---|
Human chromosome | chr15 |
Human SNP position | 45830738 |
Pig chromosome | chr1 |
Pig SNP position | 140601116 |
PubMed ID | 24159190 |
---|---|
Journal | Eur Heart J |
Link | www.ncbi.nlm.nih.gov/pubmed/24159190 |
Study | Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. |
Disease/Trait | Serum dimethylarginine levels (asymmetric/symetric ratio) |
Initial sample | 5110 European ancestry individuals |
Replication sample | NA |
Region | 15q21.1 |
Chromosome id | chr15 |
Chromosome position | 45830738 |
Reported gene | NR |
Mapped gene | SQRDL - LOC105370802 |
Upstream gene id | 58472 |
Downstream gene id | 105370802 |
SNP gene ids | |
Upstream gene distance | 139444 |
Downstream gene distance | 96091 |
SNP risk allele | rs35053544-C |
SNPs | rs35053544 |
Merged | 0 |
SNP id current | 35053544 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.075 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 0.189 |
%95 Ci | [0.11-0.26] unit decrease |
Platform | Affymetrix, Illumina [10085758] (imputed) |
CNV | N |
Mapped trait | serum dimethylarginine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005418 |
Study accession | GCST002242 |
PubMed ID | 24159190 |
Journal | Eur Heart J |
Link | www.ncbi.nlm.nih.gov/pubmed/24159190 |
Study | Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. |
Disease/Trait | Symmetrical dimethylarginine levels |
Initial sample | 5110 European ancestry individuals |
Replication sample | NA |
Region | 15q21.1 |
Chromosome id | chr15 |
Chromosome position | 45830738 |
Reported gene | NR |
Mapped gene | SQRDL - LOC105370802 |
Upstream gene id | 58472 |
Downstream gene id | 105370802 |
SNP gene ids | |
Upstream gene distance | 139444 |
Downstream gene distance | 96091 |
SNP risk allele | rs35053544-C |
SNPs | rs35053544 |
Merged | 0 |
SNP id current | 35053544 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.076 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 0.173 |
%95 Ci | [0.099-0.247] unit increase |
Platform | Affymetrix, Illumina [10085758] (imputed) |
CNV | N |
Mapped trait | serum dimethylarginine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005418 |
Study accession | GCST002239 |