Human SNP ID | rs34920465 |
---|---|
Human chromosome | chr1 |
Human SNP position | 22373858 |
Pig chromosome | chr6 |
Pig SNP position | 74374438 |
PubMed ID | 24249740 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24249740 |
Study | Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. |
Disease/Trait | Bone mineral density |
Initial sample | 5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females |
Replication sample | 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22373858 |
Reported gene | ZBTB40 |
Mapped gene | LOC101060363 - LOC105376856 |
Upstream gene id | 101060363 |
Downstream gene id | 105376856 |
SNP gene ids | |
Upstream gene distance | 50527 |
Downstream gene distance | 42473 |
SNP risk allele | rs34920465-? |
SNPs | rs34920465 |
Merged | 0 |
SNP id current | 34920465 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000000003 |
Pvalue mlog | 12.5228787452803 |
P value text | (spine) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [5842825] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002276 |
PubMed ID | 24249740 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24249740 |
Study | Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. |
Disease/Trait | Bone mineral density |
Initial sample | 5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females |
Replication sample | 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22373858 |
Reported gene | ZBTB40 |
Mapped gene | LOC101060363 - LOC105376856 |
Upstream gene id | 101060363 |
Downstream gene id | 105376856 |
SNP gene ids | |
Upstream gene distance | 50527 |
Downstream gene distance | 42473 |
SNP risk allele | rs34920465-? |
SNPs | rs34920465 |
Merged | 0 |
SNP id current | 34920465 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (FNK) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [5842825] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002276 |
PubMed ID | 26192919 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26192919 |
Study | Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. |
Disease/Trait | Inflammatory bowel disease |
Initial sample | 12,882 European ancestry cases, 21,770 European ancestry controls |
Replication sample | 25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22373858 |
Reported gene | NR |
Mapped gene | LOC101060363 - LOC105376856 |
Upstream gene id | 101060363 |
Downstream gene id | 105376856 |
SNP gene ids | |
Upstream gene distance | 50527 |
Downstream gene distance | 42473 |
SNP risk allele | rs34920465-? |
SNPs | rs34920465 |
Merged | 0 |
SNP id current | 34920465 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | (EA) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST003043 |