SNP Detail For rs34920465
1.Mapping Information
Human SNP ID rs34920465
Human chromosome chr1
Human SNP position 22373858
Pig chromosome chr6
Pig SNP position 74374438
2.Annotation Information
PubMed ID24249740
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24249740
StudyMultistage genome-wide association meta-analyses identified two new loci for bone mineral density.
Disease/TraitBone mineral density
Initial sample5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females
Replication sample7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males
Region1p36.12
Chromosome idchr1
Chromosome position22373858
Reported geneZBTB40
Mapped geneLOC101060363 - LOC105376856
Upstream gene id101060363
Downstream gene id105376856
SNP gene ids
Upstream gene distance50527
Downstream gene distance42473
SNP risk allelers34920465-?
SNPsrs34920465
Merged0
SNP id current34920465
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text(spine)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [5842825] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST002276
PubMed ID24249740
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24249740
StudyMultistage genome-wide association meta-analyses identified two new loci for bone mineral density.
Disease/TraitBone mineral density
Initial sample5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females
Replication sample7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males
Region1p36.12
Chromosome idchr1
Chromosome position22373858
Reported geneZBTB40
Mapped geneLOC101060363 - LOC105376856
Upstream gene id101060363
Downstream gene id105376856
SNP gene ids
Upstream gene distance50527
Downstream gene distance42473
SNP risk allelers34920465-?
SNPsrs34920465
Merged0
SNP id current34920465
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text(FNK)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [5842825] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST002276
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region1p36.12
Chromosome idchr1
Chromosome position22373858
Reported geneNR
Mapped geneLOC101060363 - LOC105376856
Upstream gene id101060363
Downstream gene id105376856
SNP gene ids
Upstream gene distance50527
Downstream gene distance42473
SNP risk allelers34920465-?
SNPsrs34920465
Merged0
SNP id current34920465
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000000001
Pvalue mlog10
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043