Human SNP ID | rs34894639 |
---|---|
Human chromosome | chr3 |
Human SNP position | 136079816 |
Pig chromosome | chr13 |
Pig SNP position | 84444269 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Triglycerides |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 3q22.3 |
Chromosome id | chr3 |
Chromosome position | 136079816 |
Reported gene | MSL2L1 |
Mapped gene | PPP2R3A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5523 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs34894639-C |
SNPs | rs34894639 |
Merged | |
SNP id current | 34894639 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.000000008 |
Pvalue mlog | 8.09691001300805 |
P value text | |
Or beta | 0.042 |
%95 Ci | [0.028-0.056] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST002897 |