SNP Detail For rs34894639
1.Mapping Information
Human SNP ID rs34894639
Human chromosome chr3
Human SNP position 136079816
Pig chromosome chr13
Pig SNP position 84444269
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitTriglycerides
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region3q22.3
Chromosome idchr3
Chromosome position136079816
Reported geneMSL2L1
Mapped genePPP2R3A
Upstream gene id
Downstream gene id
SNP gene ids5523
Upstream gene distance
Downstream gene distance
SNP risk allelers34894639-C
SNPsrs34894639
Merged
SNP id current34894639
Contextintron_variant
Intergenic0
Allele frequency0.78
P value0.000000008
Pvalue mlog8.09691001300805
P value text
Or beta0.042
%95 Ci[0.028-0.056] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002897