SNP Detail For rs34804116
1.Mapping Information
Human SNP ID rs34804116
Human chromosome chr5
Human SNP position 73244023
Pig chromosome chr2
Pig SNP position 84114735
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region5q13.2
Chromosome idchr5
Chromosome position73244023
Reported geneNR
Mapped geneLOC340090 - LOC105379031
Upstream gene id340090
Downstream gene id105379031
SNP gene ids
Upstream gene distance42054
Downstream gene distance2471
SNP risk allelers34804116-?
SNPsrs34804116
Merged
SNP id current34804116
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.0000000000001
Pvalue mlog13
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044