Human SNP ID | rs34670419 |
---|---|
Human chromosome | chr7 |
Human SNP position | 99533211 |
Pig chromosome | chr3 |
Pig SNP position | 6589273 |
PubMed ID | 26014426 |
---|---|
Journal | Eur J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26014426 |
Study | Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes. |
Disease/Trait | Sex hormone levels |
Initial sample | up to 2913 European ancestry individuals |
Replication sample | NA |
Region | 7q22.1 |
Chromosome id | chr7 |
Chromosome position | 99533211 |
Reported gene | ZKSCAN5, CYP3A4, CYP3A7 |
Mapped gene | ZKSCAN5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23660 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs34670419-T |
SNPs | rs34670419 |
Merged | 0 |
SNP id current | 34670419 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.037 |
P value | 0.00000000000006 |
Pvalue mlog | 13.2218487496163 |
P value text | (Progesterone) |
Or beta | 0.346 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [7879351] (imputed) |
CNV | N |
Mapped trait | hormone measurement, progesterone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004730, http://www.ebi.ac.uk/efo/EFO_0007004 |
Study accession | GCST002925 |
PubMed ID | 26014426 |
Journal | Eur J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26014426 |
Study | Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes. |
Disease/Trait | Sex hormone levels |
Initial sample | up to 2913 European ancestry individuals |
Replication sample | NA |
Region | 7q22.1 |
Chromosome id | chr7 |
Chromosome position | 99533211 |
Reported gene | ZKSCAN5, CYP3A4, CYP3A7 |
Mapped gene | ZKSCAN5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23660 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs34670419-T |
SNPs | rs34670419 |
Merged | 0 |
SNP id current | 34670419 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.037 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | (DHEAS) |
Or beta | 0.259 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [7879351] (imputed) |
CNV | N |
Mapped trait | hormone measurement, dehydroepiandrosterone sulphate measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004730, http://www.ebi.ac.uk/efo/EFO_0007001 |
Study accession | GCST002925 |
PubMed ID | 26014426 |
Journal | Eur J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26014426 |
Study | Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes. |
Disease/Trait | Sex hormone levels |
Initial sample | up to 2913 European ancestry individuals |
Replication sample | NA |
Region | 7q22.1 |
Chromosome id | chr7 |
Chromosome position | 99533211 |
Reported gene | ZKSCAN5, CYP3A4, CYP3A7 |
Mapped gene | ZKSCAN5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23660 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs34670419-T |
SNPs | rs34670419 |
Merged | 0 |
SNP id current | 34670419 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.037 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (Testosterone) |
Or beta | 0.213 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [7879351] (imputed) |
CNV | N |
Mapped trait | hormone measurement, testosterone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004730, http://www.ebi.ac.uk/efo/EFO_0004908 |
Study accession | GCST002925 |