SNP Detail For rs346221
1.Mapping Information
Human SNP ID rs346221
Human chromosome chr18
Human SNP position 42443341
Pig chromosome chr6
Pig SNP position 118431830
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (PAL4Q3)
Initial sampleup to 2,969 European ancestry individuals
Replication sampleNA
Region18q12.3
Chromosome idchr18
Chromosome position42443341
Reported geneRIT2
Mapped geneLINC00907
Upstream gene id
Downstream gene id
SNP gene ids284260
Upstream gene distance
Downstream gene distance
SNP risk allelers346221-A
SNPsrs346221
Merged0
SNP id current346221
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.000004
Pvalue mlog5.39794000867203
P value text(Age 20-81 years)
Or beta1.31
%95 Ci[1.17-1.47]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002136