Human SNP ID | rs346221 |
---|---|
Human chromosome | chr18 |
Human SNP position | 42443341 |
Pig chromosome | chr6 |
Pig SNP position | 118431830 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (PAL4Q3) |
Initial sample | up to 2,969 European ancestry individuals |
Replication sample | NA |
Region | 18q12.3 |
Chromosome id | chr18 |
Chromosome position | 42443341 |
Reported gene | RIT2 |
Mapped gene | LINC00907 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 284260 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs346221-A |
SNPs | rs346221 |
Merged | 0 |
SNP id current | 346221 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.64 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Age 20-81 years) |
Or beta | 1.31 |
%95 Ci | [1.17-1.47] |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002136 |