SNP Detail For rs34517613
1.Mapping Information
Human SNP ID rs34517613
Human chromosome chr17
Human SNP position 28283226
Pig chromosome chr12
Pig SNP position 19066735
2.Annotation Information
PubMed ID24256812
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24256812
StudyA genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.
Disease/TraitAmyotrophic lateral sclerosis (sporadic)
Initial sample6,100 European ancestry cases, 7,125 European ancestry controls
Replication sample2,074 European ancestry cases, 2,556 European ancestry controls
Region17q11.2
Chromosome idchr17
Chromosome position28283226
Reported geneSALM1
Mapped geneKRT18P55
Upstream gene id
Downstream gene id
SNP gene ids284085
Upstream gene distance
Downstream gene distance
SNP risk allelers34517613-T
SNPsrs34517613
Merged0
SNP id current34517613
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta1.2
%95 Ci[1.12-1.29]
PlatformIllumina [~ 7000000] (imputed)
CNVN
Mapped traitsporadic amyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001357
Study accessionGCST002283