SNP Detail For rs343604
1.Mapping Information
Human SNP ID rs343604
Human chromosome chr1
Human SNP position 110716148
Pig chromosome chr4
Pig SNP position 119824467
2.Annotation Information
PubMed ID22076464
JournalLeukemia
Linkwww.ncbi.nlm.nih.gov/pubmed/22076464
StudyIdentification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls
Replication sample951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls
Region1p13.3
Chromosome idchr1
Chromosome position110716148
Reported geneKCNA3
Mapped geneKCNA3 - LOC105378901
Upstream gene id3738
Downstream gene id105378901
SNP gene ids
Upstream gene distance41115
Downstream gene distance33056
SNP risk allelers343604-T
SNPsrs343604
Merged0
SNP id current343604
Contextintergenic_variant
Intergenic1
Allele frequency0.08
P value0.000001
Pvalue mlog6
P value text(ETV6-RUNX1 positive, Northern European)
Or beta
%95 Ci
PlatformAffymetrix [355750]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST001320