Human SNP ID | rs343604 |
---|---|
Human chromosome | chr1 |
Human SNP position | 110716148 |
Pig chromosome | chr4 |
Pig SNP position | 119824467 |
PubMed ID | 22076464 |
---|---|
Journal | Leukemia |
Link | www.ncbi.nlm.nih.gov/pubmed/22076464 |
Study | Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls |
Replication sample | 951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 110716148 |
Reported gene | KCNA3 |
Mapped gene | KCNA3 - LOC105378901 |
Upstream gene id | 3738 |
Downstream gene id | 105378901 |
SNP gene ids | |
Upstream gene distance | 41115 |
Downstream gene distance | 33056 |
SNP risk allele | rs343604-T |
SNPs | rs343604 |
Merged | 0 |
SNP id current | 343604 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.08 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (ETV6-RUNX1 positive, Northern European) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [355750] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST001320 |