Human SNP ID | rs343092 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65857160 |
Pig chromosome | chr5 |
Pig SNP position | 33409614 |
PubMed ID | 25102180 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25102180 |
Study | Meta-analysis of genome-wide association studies in african americans provides insights into the genetic architecture of type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 8,284 African American cases, 15,543 African American controls |
Replication sample | 6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65857160 |
Reported gene | HMGA2 |
Mapped gene | LOC100129940, HMGA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100129940, 8091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs343092-T |
SNPs | rs343092 |
Merged | 0 |
SNP id current | 343092 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.81 |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | (AA) |
Or beta | 1.16 |
%95 Ci | [1.1-1.22] |
Platform | Affymetrix, Illumina [2579389] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002560 |
PubMed ID | 25102180 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25102180 |
Study | Meta-analysis of genome-wide association studies in african americans provides insights into the genetic architecture of type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 8,284 African American cases, 15,543 African American controls |
Replication sample | 6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65857160 |
Reported gene | HMGA2 |
Mapped gene | LOC100129940, HMGA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100129940, 8091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs343092-T |
SNPs | rs343092 |
Merged | 0 |
SNP id current | 343092 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.81 |
P value | 0.000000000003 |
Pvalue mlog | 11.5228787452803 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.10-1.19] |
Platform | Affymetrix, Illumina [2579389] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002560 |