SNP Detail For rs343092
1.Mapping Information
Human SNP ID rs343092
Human chromosome chr12
Human SNP position 65857160
Pig chromosome chr5
Pig SNP position 33409614
2.Annotation Information
PubMed ID25102180
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25102180
StudyMeta-analysis of genome-wide association studies in african americans provides insights into the genetic architecture of type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample8,284 African American cases, 15,543 African American controls
Replication sample6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls
Region12q14.3
Chromosome idchr12
Chromosome position65857160
Reported geneHMGA2
Mapped geneLOC100129940, HMGA2
Upstream gene id
Downstream gene id
SNP gene ids100129940, 8091
Upstream gene distance
Downstream gene distance
SNP risk allelers343092-T
SNPsrs343092
Merged0
SNP id current343092
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.81
P value0.000000009
Pvalue mlog8.04575749056067
P value text(AA)
Or beta1.16
%95 Ci[1.1-1.22]
PlatformAffymetrix, Illumina [2579389] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002560
PubMed ID25102180
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25102180
StudyMeta-analysis of genome-wide association studies in african americans provides insights into the genetic architecture of type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample8,284 African American cases, 15,543 African American controls
Replication sample6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls
Region12q14.3
Chromosome idchr12
Chromosome position65857160
Reported geneHMGA2
Mapped geneLOC100129940, HMGA2
Upstream gene id
Downstream gene id
SNP gene ids100129940, 8091
Upstream gene distance
Downstream gene distance
SNP risk allelers343092-T
SNPsrs343092
Merged0
SNP id current343092
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.81
P value0.000000000003
Pvalue mlog11.5228787452803
P value text
Or beta1.14
%95 Ci[1.10-1.19]
PlatformAffymetrix, Illumina [2579389] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002560