Human SNP ID | rs34198350 |
---|---|
Human chromosome | chr2 |
Human SNP position | 47942243 |
Pig chromosome | chr3 |
Pig SNP position | 98504457 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | QT interval in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 2p16.3 |
Chromosome id | chr2 |
Chromosome position | 47942243 |
Reported gene | NR |
Mapped gene | LOC105374591 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374591 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs34198350-? |
SNPs | rs34198350 |
Merged | 0 |
SNP id current | 34198350 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | QT interval, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002278 |