Human SNP ID | rs340839 |
---|---|
Human chromosome | chr1 |
Human SNP position | 213988477 |
Pig chromosome | chr9 |
Pig SNP position | 142477656 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Triglycerides |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 1q32.3 |
Chromosome id | chr1 |
Chromosome position | 213988477 |
Reported gene | PROX1 |
Mapped gene | PROX1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5629 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs340839-A |
SNPs | rs340839 |
Merged | |
SNP id current | 340839 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 0.039 |
%95 Ci | [0.027-0.051] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST002897 |