SNP Detail For rs340839
1.Mapping Information
Human SNP ID rs340839
Human chromosome chr1
Human SNP position 213988477
Pig chromosome chr9
Pig SNP position 142477656
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitTriglycerides
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region1q32.3
Chromosome idchr1
Chromosome position213988477
Reported genePROX1
Mapped genePROX1
Upstream gene id
Downstream gene id
SNP gene ids5629
Upstream gene distance
Downstream gene distance
SNP risk allelers340839-A
SNPsrs340839
Merged
SNP id current340839
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.47
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta0.039
%95 Ci[0.027-0.051] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002897