SNP Detail For rs337847
1.Mapping Information
Human SNP ID rs337847
Human chromosome chr5
Human SNP position 78964065
Pig chromosome chr2
Pig SNP position 89584057
2.Annotation Information
PubMed ID19668339
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/19668339
StudyHippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease.
Disease/TraitHippocampal atrophy
Initial sample162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position78964065
Reported geneARSB
Mapped geneARSB
Upstream gene id
Downstream gene id
SNP gene ids411
Upstream gene distance
Downstream gene distance
SNP risk allelers337847-?
SNPsrs337847
Merged0
SNP id current337847
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformIllumina [516645]
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST000461