SNP Detail For rs336284
1.Mapping Information
Human SNP ID rs336284
Human chromosome chr7
Human SNP position 35254361
Pig chromosome chr18
Pig SNP position 42466381
2.Annotation Information
PubMed ID26079190
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26079190
StudyA genome-wide association study of suicidal behavior.
Disease/TraitSuicide
Initial sample317 European ancestry cases, 1,233 European ancestry controls
Replication sampleNA
Region7p14.2
Chromosome idchr7
Chromosome position35254361
Reported geneTBX20
Mapped geneTBX20 - LOC401324
Upstream gene id57057
Downstream gene id401324
SNP gene ids
Upstream gene distance261
Downstream gene distance59494
SNP risk allelers336284-A
SNPsrs336284
Merged
SNP id current336284
Contextupstream_gene_variant
Intergenic1
Allele frequency0.45
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.661
%95 Ci[1.374鈥?.008]
PlatformIllumina [794207]
CNVN
Mapped traitsuicide
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007624
Study accessionGCST002973
PubMed ID26079190
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26079190
StudyA genome-wide association study of suicidal behavior.
Disease/TraitSuicide behavior
Initial sample577 European ancestry cases, 1,233 European ancestry controls
Replication sampleNA
Region7p14.2
Chromosome idchr7
Chromosome position35254361
Reported geneTBX20
Mapped geneTBX20 - LOC401324
Upstream gene id57057
Downstream gene id401324
SNP gene ids
Upstream gene distance261
Downstream gene distance59494
SNP risk allelers336284-A
SNPsrs336284
Merged
SNP id current336284
Contextupstream_gene_variant
Intergenic1
Allele frequency0.45
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.392
%95 Ci[1.204鈥?.609]
PlatformIllumina [794207]
CNVN
Mapped traitsuicide behaviour
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007623
Study accessionGCST002969