Human SNP ID | rs336284 |
---|---|
Human chromosome | chr7 |
Human SNP position | 35254361 |
Pig chromosome | chr18 |
Pig SNP position | 42466381 |
PubMed ID | 26079190 |
---|---|
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26079190 |
Study | A genome-wide association study of suicidal behavior. |
Disease/Trait | Suicide |
Initial sample | 317 European ancestry cases, 1,233 European ancestry controls |
Replication sample | NA |
Region | 7p14.2 |
Chromosome id | chr7 |
Chromosome position | 35254361 |
Reported gene | TBX20 |
Mapped gene | TBX20 - LOC401324 |
Upstream gene id | 57057 |
Downstream gene id | 401324 |
SNP gene ids | |
Upstream gene distance | 261 |
Downstream gene distance | 59494 |
SNP risk allele | rs336284-A |
SNPs | rs336284 |
Merged | |
SNP id current | 336284 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.45 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.661 |
%95 Ci | [1.374鈥?.008] |
Platform | Illumina [794207] |
CNV | N |
Mapped trait | suicide |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007624 |
Study accession | GCST002973 |
PubMed ID | 26079190 |
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26079190 |
Study | A genome-wide association study of suicidal behavior. |
Disease/Trait | Suicide behavior |
Initial sample | 577 European ancestry cases, 1,233 European ancestry controls |
Replication sample | NA |
Region | 7p14.2 |
Chromosome id | chr7 |
Chromosome position | 35254361 |
Reported gene | TBX20 |
Mapped gene | TBX20 - LOC401324 |
Upstream gene id | 57057 |
Downstream gene id | 401324 |
SNP gene ids | |
Upstream gene distance | 261 |
Downstream gene distance | 59494 |
SNP risk allele | rs336284-A |
SNPs | rs336284 |
Merged | |
SNP id current | 336284 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.45 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.392 |
%95 Ci | [1.204鈥?.609] |
Platform | Illumina [794207] |
CNV | N |
Mapped trait | suicide behaviour |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007623 |
Study accession | GCST002969 |