SNP Detail For rs334809
1.Mapping Information
Human SNP ID rs334809
Human chromosome chr3
Human SNP position 3088537
Pig chromosome chr13
Pig SNP position 65966252
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitOleic acid (18:1n-9) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region3p26.2
Chromosome idchr3
Chromosome position3088537
Reported geneIL5RA
Mapped geneIL5RA
Upstream gene id
Downstream gene id
SNP gene ids3568
Upstream gene distance
Downstream gene distance
SNP risk allelers334809-A
SNPsrs334809
Merged0
SNP id current334809
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.3286
%95 Ciunit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001834