Human SNP ID | rs333119 |
---|---|
Human chromosome | chr17 |
Human SNP position | 4490203 |
Pig chromosome | chr12 |
Pig SNP position | 52447266 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 17p13.2 |
Chromosome id | chr17 |
Chromosome position | 4490203 |
Reported gene | SPNS3 |
Mapped gene | SPNS3 - SPNS2 |
Upstream gene id | 201305 |
Downstream gene id | 124976 |
SNP gene ids | |
Upstream gene distance | 1999 |
Downstream gene distance | 8631 |
SNP risk allele | rs333119-A |
SNPs | rs333119 |
Merged | 0 |
SNP id current | 333119 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.007 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (MCP1 ) |
Or beta | 0.02 |
%95 Ci | [NR] pg/mL increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | CCL2 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004749 |
Study accession | GCST001762 |