SNP Detail For rs333119
1.Mapping Information
Human SNP ID rs333119
Human chromosome chr17
Human SNP position 4490203
Pig chromosome chr12
Pig SNP position 52447266
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region17p13.2
Chromosome idchr17
Chromosome position4490203
Reported geneSPNS3
Mapped geneSPNS3 - SPNS2
Upstream gene id201305
Downstream gene id124976
SNP gene ids
Upstream gene distance1999
Downstream gene distance8631
SNP risk allelers333119-A
SNPsrs333119
Merged0
SNP id current333119
Contextupstream_gene_variant
Intergenic1
Allele frequency0.007
P value0.000006
Pvalue mlog5.22184874961635
P value text(MCP1 )
Or beta0.02
%95 Ci[NR] pg/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitCCL2 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004749
Study accessionGCST001762