SNP Detail For rs322458
1.Mapping Information
Human SNP ID rs322458
Human chromosome chr3
Human SNP position 120866468
Pig chromosome chr13
Pig SNP position 149110043
2.Annotation Information
PubMed ID23223146
JournalJ Invest Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/23223146
StudyA genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.
Disease/TraitAging (facial)
Initial sample502 European ancestry females
Replication sampleNA
Region3q13.33
Chromosome idchr3
Chromosome position120866468
Reported geneFBXO40, STXBP5L
Mapped geneLOC105374069
Upstream gene id
Downstream gene id
SNP gene ids105374069
Upstream gene distance
Downstream gene distance
SNP risk allelers322458-G
SNPsrs322458
Merged0
SNP id current322458
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [795063]
CNVN
Mapped traitaging
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0007568
Study accessionGCST001767
PubMed ID23223146
JournalJ Invest Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/23223146
StudyA genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.
Disease/TraitAging (facial)
Initial sample502 European ancestry females
Replication sampleNA
Region3q13.33
Chromosome idchr3;3
Chromosome position120866468;121381436
Reported geneFBXO40, STXBP5L
Mapped geneLOC105374069; STXBP5L
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers322458-G; rs17740066-G
SNPsrs322458; rs17740066
Merged0
SNP id current
Contextintergenic_variant; missense_variant
Intergenic
Allele frequencyNR
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta
%95 Ci
PlatformIllumina [795063]
CNVN
Mapped traitaging
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0007568
Study accessionGCST001767
PubMed ID23223146
JournalJ Invest Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/23223146
StudyA genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.
Disease/TraitAging (facial)
Initial sample502 European ancestry females
Replication sampleNA
Region3q13.33
Chromosome idchr3;3
Chromosome position120866468;121600977
Reported genePOLQ, FBXO40, STXBP5L
Mapped geneLOC105374069; FBXO40; LOC105374070
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers322458-G; rs6775899-A
SNPsrs322458; rs6775899
Merged0
SNP id current
Contextintergenic_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.000000001
Pvalue mlog9
P value text
Or beta
%95 Ci
PlatformIllumina [795063]
CNVN
Mapped traitaging
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0007568
Study accessionGCST001767
PubMed ID23223146
JournalJ Invest Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/23223146
StudyA genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.
Disease/TraitAging (facial)
Initial sample502 European ancestry females
Replication sampleNA
Region3q13.33
Chromosome idchr3;3
Chromosome position120866468;121419129
Reported geneFBXO40, STXBP5L
Mapped geneLOC105374069; STXBP5L
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers322458-G; rs6782025-A
SNPsrs322458; rs6782025
Merged0
SNP id current
Contextintergenic_variant; 3_prime_UTR_variant
Intergenic
Allele frequencyNR
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta
%95 Ci
PlatformIllumina [795063]
CNVN
Mapped traitaging
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0007568
Study accessionGCST001767