Human SNP ID | rs322458 |
---|---|
Human chromosome | chr3 |
Human SNP position | 120866468 |
Pig chromosome | chr13 |
Pig SNP position | 149110043 |
PubMed ID | 23223146 |
---|---|
Journal | J Invest Dermatol |
Link | www.ncbi.nlm.nih.gov/pubmed/23223146 |
Study | A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging. |
Disease/Trait | Aging (facial) |
Initial sample | 502 European ancestry females |
Replication sample | NA |
Region | 3q13.33 |
Chromosome id | chr3 |
Chromosome position | 120866468 |
Reported gene | FBXO40, STXBP5L |
Mapped gene | LOC105374069 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374069 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs322458-G |
SNPs | rs322458 |
Merged | 0 |
SNP id current | 322458 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [795063] |
CNV | N |
Mapped trait | aging |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0007568 |
Study accession | GCST001767 |
PubMed ID | 23223146 |
Journal | J Invest Dermatol |
Link | www.ncbi.nlm.nih.gov/pubmed/23223146 |
Study | A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging. |
Disease/Trait | Aging (facial) |
Initial sample | 502 European ancestry females |
Replication sample | NA |
Region | 3q13.33 |
Chromosome id | chr3;3 |
Chromosome position | 120866468;121381436 |
Reported gene | FBXO40, STXBP5L |
Mapped gene | LOC105374069; STXBP5L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs322458-G; rs17740066-G |
SNPs | rs322458; rs17740066 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant; missense_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [795063] |
CNV | N |
Mapped trait | aging |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0007568 |
Study accession | GCST001767 |
PubMed ID | 23223146 |
Journal | J Invest Dermatol |
Link | www.ncbi.nlm.nih.gov/pubmed/23223146 |
Study | A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging. |
Disease/Trait | Aging (facial) |
Initial sample | 502 European ancestry females |
Replication sample | NA |
Region | 3q13.33 |
Chromosome id | chr3;3 |
Chromosome position | 120866468;121600977 |
Reported gene | POLQ, FBXO40, STXBP5L |
Mapped gene | LOC105374069; FBXO40; LOC105374070 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs322458-G; rs6775899-A |
SNPs | rs322458; rs6775899 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant; intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [795063] |
CNV | N |
Mapped trait | aging |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0007568 |
Study accession | GCST001767 |
PubMed ID | 23223146 |
Journal | J Invest Dermatol |
Link | www.ncbi.nlm.nih.gov/pubmed/23223146 |
Study | A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging. |
Disease/Trait | Aging (facial) |
Initial sample | 502 European ancestry females |
Replication sample | NA |
Region | 3q13.33 |
Chromosome id | chr3;3 |
Chromosome position | 120866468;121419129 |
Reported gene | FBXO40, STXBP5L |
Mapped gene | LOC105374069; STXBP5L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs322458-G; rs6782025-A |
SNPs | rs322458; rs6782025 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant; 3_prime_UTR_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [795063] |
CNV | N |
Mapped trait | aging |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0007568 |
Study accession | GCST001767 |