SNP Detail For rs3219090
1.Mapping Information
Human SNP ID rs3219090
Human chromosome chr1
Human SNP position 226376990
Pig chromosome chr10
Pig SNP position 16611873
2.Annotation Information
PubMed ID21983785
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21983785
StudyGenome-wide association study identifies a new melanoma susceptibility locus at 1q21.3.
Disease/TraitMelanoma
Initial sample2,168 European ancestry cases, 4,387 European ancestry controls
Replication sample5,193 European ancestry cases, 15,144 European ancestry controls
Region1q42.12
Chromosome idchr1
Chromosome position226376990
Reported genePARP1
Mapped genePARP1
Upstream gene id
Downstream gene id
SNP gene ids142
Upstream gene distance
Downstream gene distance
SNP risk allelers3219090-C
SNPsrs3219090
Merged0
SNP id current3219090
Contextintron_variant
Intergenic0
Allele frequency0.67
P value0.00000009
Pvalue mlog7.04575749056067
P value text
Or beta1.15
%95 Ci[NR]
PlatformIllumina [5480804] (imputed)
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST001266