Human SNP ID | rs3219090 |
---|---|
Human chromosome | chr1 |
Human SNP position | 226376990 |
Pig chromosome | chr10 |
Pig SNP position | 16611873 |
PubMed ID | 21983785 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21983785 |
Study | Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3. |
Disease/Trait | Melanoma |
Initial sample | 2,168 European ancestry cases, 4,387 European ancestry controls |
Replication sample | 5,193 European ancestry cases, 15,144 European ancestry controls |
Region | 1q42.12 |
Chromosome id | chr1 |
Chromosome position | 226376990 |
Reported gene | PARP1 |
Mapped gene | PARP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 142 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3219090-C |
SNPs | rs3219090 |
Merged | 0 |
SNP id current | 3219090 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.67 |
P value | 0.00000009 |
Pvalue mlog | 7.04575749056067 |
P value text | |
Or beta | 1.15 |
%95 Ci | [NR] |
Platform | Illumina [5480804] (imputed) |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST001266 |