SNP Detail For rs3217901
1.Mapping Information
Human SNP ID rs3217901
Human chromosome chr12
Human SNP position 4296223
Pig chromosome chr5
Pig SNP position 68317160
2.Annotation Information
PubMed ID23266556
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266556
StudyIdentification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.
Disease/TraitColorectal cancer
Initial sample12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls
Replication sample958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls
Region12p13.32
Chromosome idchr12
Chromosome position4296223
Reported geneCCND2
Mapped geneCCND2
Upstream gene id
Downstream gene id
SNP gene ids894
Upstream gene distance
Downstream gene distance
SNP risk allelers3217901-G
SNPsrs3217901
Merged0
SNP id current3217901
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.1
%95 Ci[1.06-1.14]
PlatformAffymetrix, Illumina [2708280] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001787
PubMed ID26151821
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26151821
StudyGenome-wide association study of colorectal cancer identifies six new susceptibility loci.
Disease/TraitColorectal cancer
Initial sample18,299 European ancestry cases, 19,656 European ancestry controls
Replication sample4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls
Region12p13.32
Chromosome idchr12
Chromosome position4296223
Reported geneCCND2
Mapped geneCCND2
Upstream gene id
Downstream gene id
SNP gene ids894
Upstream gene distance
Downstream gene distance
SNP risk allelers3217901-G
SNPsrs3217901
Merged0
SNP id current3217901
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.0869565
%95 Ci[1.05-1.12]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST003017