Human SNP ID | rs3217901 |
---|---|
Human chromosome | chr12 |
Human SNP position | 4296223 |
Pig chromosome | chr5 |
Pig SNP position | 68317160 |
PubMed ID | 23266556 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/23266556 |
Study | Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis. |
Disease/Trait | Colorectal cancer |
Initial sample | 12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls |
Replication sample | 958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls |
Region | 12p13.32 |
Chromosome id | chr12 |
Chromosome position | 4296223 |
Reported gene | CCND2 |
Mapped gene | CCND2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 894 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3217901-G |
SNPs | rs3217901 |
Merged | 0 |
SNP id current | 3217901 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.41 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.06-1.14] |
Platform | Affymetrix, Illumina [2708280] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST001787 |
PubMed ID | 26151821 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26151821 |
Study | Genome-wide association study of colorectal cancer identifies six new susceptibility loci. |
Disease/Trait | Colorectal cancer |
Initial sample | 18,299 European ancestry cases, 19,656 European ancestry controls |
Replication sample | 4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls |
Region | 12p13.32 |
Chromosome id | chr12 |
Chromosome position | 4296223 |
Reported gene | CCND2 |
Mapped gene | CCND2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 894 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3217901-G |
SNPs | rs3217901 |
Merged | 0 |
SNP id current | 3217901 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.41 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.0869565 |
%95 Ci | [1.05-1.12] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST003017 |