SNP Detail For rs3217810
1.Mapping Information
Human SNP ID rs3217810
Human chromosome chr12
Human SNP position 4279105
Pig chromosome chr5
Pig SNP position 68331569
2.Annotation Information
PubMed ID23266556
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266556
StudyIdentification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.
Disease/TraitColorectal cancer
Initial sample12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls
Replication sample958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls
Region12p13.32
Chromosome idchr12
Chromosome position4279105
Reported geneCCND2
Mapped geneCCND2
Upstream gene id
Downstream gene id
SNP gene ids894
Upstream gene distance
Downstream gene distance
SNP risk allelers3217810-T
SNPsrs3217810
Merged0
SNP id current3217810
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta1.2
%95 Ci[1.12-1.28]
PlatformAffymetrix, Illumina [2708280] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001787