SNP Detail For rs31872
1.Mapping Information
Human SNP ID rs31872
Human chromosome chr5
Human SNP position 140992637
Pig chromosome chr2
Pig SNP position 148604275
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region5q31.3
Chromosome idchr5
Chromosome position140992637
Reported genePCDHAC1
Mapped genePCDHA4, PCDHAC2, PCDHA12, PCDHA6, PCDHA1, PCDHACT, PCDHAC1, PCDHA9, PCDHA3, PCDHA10, PCDHA8, PCDHA2, PCDHA13, PCDHA5, PCDHA7, PCDHA11
Upstream gene id
Downstream gene id
SNP gene ids56144, 56134, 56137, 56142, 56147, 56119, 56135, 9752, 56145, 56139, 56140, 56146, 56136, 56143, 56141, 56138
Upstream gene distance
Downstream gene distance
SNP risk allelers31872-G
SNPsrs31872
Merged0
SNP id current31872
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.000003
Pvalue mlog5.52287874528033
P value text(men)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523