Human SNP ID | rs31872 |
---|---|
Human chromosome | chr5 |
Human SNP position | 140992637 |
Pig chromosome | chr2 |
Pig SNP position | 148604275 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue adjusted for BMI |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 5q31.3 |
Chromosome id | chr5 |
Chromosome position | 140992637 |
Reported gene | PCDHAC1 |
Mapped gene | PCDHA4, PCDHAC2, PCDHA12, PCDHA6, PCDHA1, PCDHACT, PCDHAC1, PCDHA9, PCDHA3, PCDHA10, PCDHA8, PCDHA2, PCDHA13, PCDHA5, PCDHA7, PCDHA11 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56144, 56134, 56137, 56142, 56147, 56119, 56135, 9752, 56145, 56139, 56140, 56146, 56136, 56143, 56141, 56138 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs31872-G |
SNPs | rs31872 |
Merged | 0 |
SNP id current | 31872 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (men) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral adipose tissue measurement, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST001523 |