Human SNP ID | rs3181157 |
---|---|
Human chromosome | chr12 |
Human SNP position | 6199357 |
Pig chromosome | chr5 |
Pig SNP position | 66921717 |
PubMed ID | 23776197 |
---|---|
Journal | J Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23776197 |
Study | Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy. |
Disease/Trait | Paclitaxel-induced neuropathy |
Initial sample | 143 European ancestry individuals |
Replication sample | |
Region | 12p13.31 |
Chromosome id | chr12 |
Chromosome position | 6199357 |
Reported gene | CD9 |
Mapped gene | LOC105369623 - CD9 |
Upstream gene id | 105369623 |
Downstream gene id | 928 |
SNP gene ids | |
Upstream gene distance | 18416 |
Downstream gene distance | 487 |
SNP risk allele | rs3181157-A |
SNPs | rs3181157 |
Merged | 0 |
SNP id current | 3181157 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 3.22 |
%95 Ci | [1.96-5.29] |
Platform | Illumina [518577] |
CNV | N |
Mapped trait | brain serotonin transporter measurement, response to paclitaxel |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004569, http://purl.obolibrary.org/obo/GO_1901555 |
Study accession | GCST002074 |