Human SNP ID | rs3176130 |
---|---|
Human chromosome | chr20 |
Human SNP position | 23051019 |
Pig chromosome | chr17 |
Pig SNP position | 34279045 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | PR interval in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 20p11.21 |
Chromosome id | chr20 |
Chromosome position | 23051019 |
Reported gene | THBD |
Mapped gene | THBD - CD93 |
Upstream gene id | 7056 |
Downstream gene id | 22918 |
SNP gene ids | |
Upstream gene distance | 1355 |
Downstream gene distance | 28337 |
SNP risk allele | rs3176130-? |
SNPs | rs3176130 |
Merged | 0 |
SNP id current | 3176130 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | PR interval, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002279 |