SNP Detail For rs3176130
1.Mapping Information
Human SNP ID rs3176130
Human chromosome chr20
Human SNP position 23051019
Pig chromosome chr17
Pig SNP position 34279045
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region20p11.21
Chromosome idchr20
Chromosome position23051019
Reported geneTHBD
Mapped geneTHBD - CD93
Upstream gene id7056
Downstream gene id22918
SNP gene ids
Upstream gene distance1355
Downstream gene distance28337
SNP risk allelers3176130-?
SNPsrs3176130
Merged0
SNP id current3176130
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279