Human SNP ID | rs314280 |
---|---|
Human chromosome | chr6 |
Human SNP position | 104952962 |
Pig chromosome | chr1 |
Pig SNP position | 80440256 |
PubMed ID | 19448622 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19448622 |
Study | Genome-wide association study identifies sequence variants on 6q21 associated with age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | 15,297 European ancestry female individuals |
Replication sample | 10,040 European ancestry female individuals |
Region | 6q16.3 |
Chromosome id | chr6 |
Chromosome position | 104952962 |
Reported gene | BVES, LIN28B, POPDC3, HACE1, E3 ubiquitin protein ligase 1 |
Mapped gene | LIN28B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 389421 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs314280-T |
SNPs | rs314280 |
Merged | 0 |
SNP id current | 314280 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.48 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 1.2 |
%95 Ci | [0.9-1.5] months increase |
Platform | Illumina [304226] |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST000400 |