SNP Detail For rs314280
1.Mapping Information
Human SNP ID rs314280
Human chromosome chr6
Human SNP position 104952962
Pig chromosome chr1
Pig SNP position 80440256
2.Annotation Information
PubMed ID19448622
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19448622
StudyGenome-wide association study identifies sequence variants on 6q21 associated with age at menarche.
Disease/TraitMenarche (age at onset)
Initial sample15,297 European ancestry female individuals
Replication sample10,040 European ancestry female individuals
Region6q16.3
Chromosome idchr6
Chromosome position104952962
Reported geneBVES, LIN28B, POPDC3, HACE1, E3 ubiquitin protein ligase 1
Mapped geneLIN28B
Upstream gene id
Downstream gene id
SNP gene ids389421
Upstream gene distance
Downstream gene distance
SNP risk allelers314280-T
SNPsrs314280
Merged0
SNP id current314280
Contextintron_variant
Intergenic0
Allele frequency0.48
P value0.00000000000002
Pvalue mlog13.698970004336
P value text
Or beta1.2
%95 Ci[0.9-1.5] months increase
PlatformIllumina [304226]
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000400