Human SNP ID | rs3136739 |
---|---|
Human chromosome | chr8 |
Human SNP position | 42347562 |
Pig chromosome | chr17 |
Pig SNP position | 13116814 |
PubMed ID | 24578379 |
---|---|
Journal | Arterioscler Thromb Vasc Biol |
Link | www.ncbi.nlm.nih.gov/pubmed/24578379 |
Study | Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2. |
Disease/Trait | Plasma plasminogen activator levels |
Initial sample | 26,217 European ancestry individuals, 712 Orcadian individuals |
Replication sample | 4,487 European ancestry individuals |
Region | 8p11.21 |
Chromosome id | chr8 |
Chromosome position | 42347562 |
Reported gene | POLB |
Mapped gene | POLB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5423 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3136739-A |
SNPs | rs3136739 |
Merged | 0 |
SNP id current | 3136739 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.95 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 0.063 |
%95 Ci | [0.043-0.083] unit increase |
Platform | Affymetrix, Illumina [2455857] (imputed) |
CNV | N |
Mapped trait | tissue plasminogen activator measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004791 |
Study accession | GCST002374 |