SNP Detail For rs3135338
1.Mapping Information
Human SNP ID rs3135338
Human chromosome chr6
Human SNP position 32433440
Pig chromosome chr7
Pig SNP position 29032939
2.Annotation Information
PubMed ID20159113
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20159113
StudyGenome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.
Disease/TraitMultiple sclerosis
Initial sample68 Finland founder cases, 136 Finland founder controls
Replication sample83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls
Region6p21.32
Chromosome idchr6
Chromosome position32433440
Reported geneHLA
Mapped geneBTNL2 - HLA-DRA
Upstream gene id56244
Downstream gene id3122
SNP gene ids
Upstream gene distance24561
Downstream gene distance6402
SNP risk allelers3135338-A
SNPsrs3135338
Merged0
SNP id current3135338
Contextintron_variant
Intergenic1
Allele frequency0.13
P value2E-25
Pvalue mlog24.698970004336
P value text
Or beta3.43
%95 Ci[NR]
PlatformIllumina [297343]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000593