Human SNP ID | rs3135338 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32433440 |
Pig chromosome | chr7 |
Pig SNP position | 29032939 |
PubMed ID | 20159113 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20159113 |
Study | Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene. |
Disease/Trait | Multiple sclerosis |
Initial sample | 68 Finland founder cases, 136 Finland founder controls |
Replication sample | 83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32433440 |
Reported gene | HLA |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 24561 |
Downstream gene distance | 6402 |
SNP risk allele | rs3135338-A |
SNPs | rs3135338 |
Merged | 0 |
SNP id current | 3135338 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.13 |
P value | 2E-25 |
Pvalue mlog | 24.698970004336 |
P value text | |
Or beta | 3.43 |
%95 Ci | [NR] |
Platform | Illumina [297343] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000593 |